Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103130578Kinase D-interacting substrate 220b. (1689 aa)    
Predicted Functional Partners:
LOC103138494
Uncharacterized protein.
   
 
 0.806
LOC103156343
Xenotropic and polytropic retrovirus receptor 1b.
   
 
 0.806
RND1
Rho family GTPase 1.
   
 0.802
LOC103141170
Rho family GTPase 1b.
   
 0.723
LOC103145206
CRK proto-oncogene, adaptor protein.
    
 0.661
ENSPFOP00000015962
Uncharacterized protein.
    
 0.661
crkl
V-crk avian sarcoma virus CT10 oncogene homolog-like.
    
 0.656
ENSPFOP00000019778
Uncharacterized protein.
    
 0.656
LOC103144479
Sorting nexin 27a.
    
 
 0.649
SNX27
Sorting nexin 27.
    
 
 0.649
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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