LOC103129680 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103129680

Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E; Belongs to the semaphorin family. (1088 aa)

Predicted Functional Partners:

nrp1

0.778

mst1r

0.574

LOC103150629

0.574

LOC103137246

0.574

met

0.574

ENSPFOP00000000442

0.526

ENSPFOP00000008426

0.526

ENSPFOP00000024890

0.526

ENSPFOP00000025088

0.526

ENSPFOP00000029161

0.526

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000000442	ENSPFOP00000008426	ENSPFOP00000000442	ENSPFOP00000008426	Plexin_cytopl domain-containing protein.	Sema domain-containing protein.	0.685
ENSPFOP00000000442	ENSPFOP00000024890	ENSPFOP00000000442	ENSPFOP00000024890	Plexin_cytopl domain-containing protein.	Sema domain-containing protein.	0.626
ENSPFOP00000000442	ENSPFOP00000025088	ENSPFOP00000000442	ENSPFOP00000025088	Plexin_cytopl domain-containing protein.	Sema domain-containing protein.	0.634
ENSPFOP00000000442	LOC103129680	ENSPFOP00000000442	ENSPFOP00000001992	Plexin_cytopl domain-containing protein.	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E; Belongs to the semaphorin family.	0.526
ENSPFOP00000000442	LOC103137246	ENSPFOP00000000442	ENSPFOP00000016575	Plexin_cytopl domain-containing protein.	Macrophage stimulating 1 receptor a.	0.528
ENSPFOP00000000442	LOC103150629	ENSPFOP00000000442	ENSPFOP00000014452	Plexin_cytopl domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.773
ENSPFOP00000000442	met	ENSPFOP00000000442	ENSPFOP00000029456	Plexin_cytopl domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.528
ENSPFOP00000000442	mst1r	ENSPFOP00000000442	ENSPFOP00000007022	Plexin_cytopl domain-containing protein.	Macrophage stimulating 1 receptor b.	0.528
ENSPFOP00000000442	nrp1	ENSPFOP00000000442	ENSPFOP00000008564	Plexin_cytopl domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.873
ENSPFOP00000008426	ENSPFOP00000000442	ENSPFOP00000008426	ENSPFOP00000000442	Sema domain-containing protein.	Plexin_cytopl domain-containing protein.	0.685
ENSPFOP00000008426	ENSPFOP00000024890	ENSPFOP00000008426	ENSPFOP00000024890	Sema domain-containing protein.	Sema domain-containing protein.	0.577
ENSPFOP00000008426	ENSPFOP00000025088	ENSPFOP00000008426	ENSPFOP00000025088	Sema domain-containing protein.	Sema domain-containing protein.	0.573
ENSPFOP00000008426	LOC103129680	ENSPFOP00000008426	ENSPFOP00000001992	Sema domain-containing protein.	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E; Belongs to the semaphorin family.	0.526
ENSPFOP00000008426	LOC103137246	ENSPFOP00000008426	ENSPFOP00000016575	Sema domain-containing protein.	Macrophage stimulating 1 receptor a.	0.528
ENSPFOP00000008426	LOC103150629	ENSPFOP00000008426	ENSPFOP00000014452	Sema domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.773
ENSPFOP00000008426	met	ENSPFOP00000008426	ENSPFOP00000029456	Sema domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.528
ENSPFOP00000008426	mst1r	ENSPFOP00000008426	ENSPFOP00000007022	Sema domain-containing protein.	Macrophage stimulating 1 receptor b.	0.528
ENSPFOP00000008426	nrp1	ENSPFOP00000008426	ENSPFOP00000008564	Sema domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.873
ENSPFOP00000024890	ENSPFOP00000000442	ENSPFOP00000024890	ENSPFOP00000000442	Sema domain-containing protein.	Plexin_cytopl domain-containing protein.	0.626
ENSPFOP00000024890	ENSPFOP00000008426	ENSPFOP00000024890	ENSPFOP00000008426	Sema domain-containing protein.	Sema domain-containing protein.	0.577