ENSPFOP00000001997 protein (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPFOP00000001997

ATP-binding cassette, sub-family A (ABC1), member 12. (2519 aa)

Predicted Functional Partners:

LOC103141588

0.632

LOC103141589

0.632

LOC103152227

0.625

igbp1

0.622

nr1h3

0.599

ENSPFOP00000004810

0.591

ENSPFOP00000005078

0.591

gbe1

0.590

LOC103150482

0.579

nr1h4

0.579

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001997	ENSPFOP00000004810	ENSPFOP00000001997	ENSPFOP00000004810	ATP-binding cassette, sub-family A (ABC1), member 12.	Von Willebrand factor C domain containing 2 like.	0.591
ENSPFOP00000001997	ENSPFOP00000005078	ENSPFOP00000001997	ENSPFOP00000005078	ATP-binding cassette, sub-family A (ABC1), member 12.	BRCA1 associated RING domain 1.	0.591
ENSPFOP00000001997	LOC103141588	ENSPFOP00000001997	ENSPFOP00000008042	ATP-binding cassette, sub-family A (ABC1), member 12.	Uncharacterized protein.	0.632
ENSPFOP00000001997	LOC103141589	ENSPFOP00000001997	ENSPFOP00000008069	ATP-binding cassette, sub-family A (ABC1), member 12.	Uncharacterized protein.	0.632
ENSPFOP00000001997	LOC103150482	ENSPFOP00000001997	ENSPFOP00000016199	ATP-binding cassette, sub-family A (ABC1), member 12.	Nuclear receptor subfamily 1, group H, member 5.	0.579
ENSPFOP00000001997	LOC103152227	ENSPFOP00000001997	ENSPFOP00000014211	ATP-binding cassette, sub-family A (ABC1), member 12.	Cytochrome c oxidase assembly homolog 15 (yeast).	0.625
ENSPFOP00000001997	gbe1	ENSPFOP00000001997	ENSPFOP00000002092	ATP-binding cassette, sub-family A (ABC1), member 12.	Glucan (1,4-alpha-), branching enzyme 1b.	0.590
ENSPFOP00000001997	igbp1	ENSPFOP00000001997	ENSPFOP00000004754	ATP-binding cassette, sub-family A (ABC1), member 12.	Immunoglobulin (CD79A) binding protein 1.	0.622
ENSPFOP00000001997	nr1h3	ENSPFOP00000001997	ENSPFOP00000003770	ATP-binding cassette, sub-family A (ABC1), member 12.	Nuclear receptor subfamily 1, group H, member 3.	0.599
ENSPFOP00000001997	nr1h4	ENSPFOP00000001997	ENSPFOP00000016270	ATP-binding cassette, sub-family A (ABC1), member 12.	Nuclear receptor subfamily 1, group H, member 4.	0.579
ENSPFOP00000004810	ENSPFOP00000001997	ENSPFOP00000004810	ENSPFOP00000001997	Von Willebrand factor C domain containing 2 like.	ATP-binding cassette, sub-family A (ABC1), member 12.	0.591
ENSPFOP00000004810	ENSPFOP00000005078	ENSPFOP00000004810	ENSPFOP00000005078	Von Willebrand factor C domain containing 2 like.	BRCA1 associated RING domain 1.	0.608
ENSPFOP00000005078	ENSPFOP00000001997	ENSPFOP00000005078	ENSPFOP00000001997	BRCA1 associated RING domain 1.	ATP-binding cassette, sub-family A (ABC1), member 12.	0.591
ENSPFOP00000005078	ENSPFOP00000004810	ENSPFOP00000005078	ENSPFOP00000004810	BRCA1 associated RING domain 1.	Von Willebrand factor C domain containing 2 like.	0.608
LOC103141588	ENSPFOP00000001997	ENSPFOP00000008042	ENSPFOP00000001997	Uncharacterized protein.	ATP-binding cassette, sub-family A (ABC1), member 12.	0.632
LOC103141589	ENSPFOP00000001997	ENSPFOP00000008069	ENSPFOP00000001997	Uncharacterized protein.	ATP-binding cassette, sub-family A (ABC1), member 12.	0.632
LOC103150482	ENSPFOP00000001997	ENSPFOP00000016199	ENSPFOP00000001997	Nuclear receptor subfamily 1, group H, member 5.	ATP-binding cassette, sub-family A (ABC1), member 12.	0.579
LOC103152227	ENSPFOP00000001997	ENSPFOP00000014211	ENSPFOP00000001997	Cytochrome c oxidase assembly homolog 15 (yeast).	ATP-binding cassette, sub-family A (ABC1), member 12.	0.625
gbe1	ENSPFOP00000001997	ENSPFOP00000002092	ENSPFOP00000001997	Glucan (1,4-alpha-), branching enzyme 1b.	ATP-binding cassette, sub-family A (ABC1), member 12.	0.590
igbp1	ENSPFOP00000001997	ENSPFOP00000004754	ENSPFOP00000001997	Immunoglobulin (CD79A) binding protein 1.	ATP-binding cassette, sub-family A (ABC1), member 12.	0.622