STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmc8Transmembrane channel-like protein. (700 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
    
  0.492
LOC103144737
Cornichon family AMPA receptor auxiliary protein 1.
    
 0.492
LOC103142414
Protein tyrosine phosphatase receptor type Ua.
    
 0.484
LOC103143151
Protein tyrosine phosphatase receptor type Ub.
    
 0.484
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.474
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.474
ENSPFOP00000018212
SH3 and multiple ankyrin repeat domains 2a.
   
 0.464
LOC103151399
Uncharacterized protein.
  
 
  0.457
ENSPFOP00000015763
Mindbomb E3 ubiquitin protein ligase 2.
   
  0.457
ENSPFOP00000028219
Uncharacterized protein.
    
  0.455
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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