Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000002009Transcription factor SOX. (332 aa)    
Predicted Functional Partners:
ENSPFOP00000006027
Transcription factor 7.
    
 0.677
sox5
SRY-box transcription factor 5.
   
 0.673
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.665
hoxc6
Homeobox C6a.
    
 0.633
LOC103147705
POU domain protein.
    
 0.615
ENSPFOP00000011033
Lymphoid enhancer-binding factor 1.
    
 0.608
ENSPFOP00000029800
SRY-box transcription factor 13.
    
 0.603
LOC103131252
Junction plakoglobin a.
    
 0.572
LOC103135024
Uncharacterized protein.
    
 0.572
ENSPFOP00000001908
HMG box domain-containing protein.
    
 0.545
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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