rragc protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rragc

Ras-related GTP binding Ca. (382 aa)

Predicted Functional Partners:

ENSPFOP00000019575

0.997

mtor

0.996

ENSPFOP00000008463

0.996

lamtor5

0.996

lamtor3

0.995

flcn

0.995

lamtor2

0.995

lamtor4

0.990

ENSPFOP00000016945

0.990

mlst8

0.972

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000008463	ENSPFOP00000016945	ENSPFOP00000008463	ENSPFOP00000016945	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Regulatory associated protein of MTOR, complex 1.	0.995
ENSPFOP00000008463	ENSPFOP00000019575	ENSPFOP00000008463	ENSPFOP00000019575	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Ras-related GTP binding A.	0.999
ENSPFOP00000008463	flcn	ENSPFOP00000008463	ENSPFOP00000009941	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Folliculin.	0.955
ENSPFOP00000008463	lamtor2	ENSPFOP00000008463	ENSPFOP00000011278	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.999
ENSPFOP00000008463	lamtor3	ENSPFOP00000008463	ENSPFOP00000005712	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.999
ENSPFOP00000008463	lamtor4	ENSPFOP00000008463	ENSPFOP00000015859	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.999
ENSPFOP00000008463	lamtor5	ENSPFOP00000008463	ENSPFOP00000012690	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.999
ENSPFOP00000008463	mlst8	ENSPFOP00000008463	ENSPFOP00000014281	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	MTOR associated protein, LST8 homolog (S. cerevisiae).	0.981
ENSPFOP00000008463	mtor	ENSPFOP00000008463	ENSPFOP00000008461	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.974
ENSPFOP00000008463	rragc	ENSPFOP00000008463	ENSPFOP00000002015	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Ras-related GTP binding Ca.	0.996
ENSPFOP00000016945	ENSPFOP00000008463	ENSPFOP00000016945	ENSPFOP00000008463	Regulatory associated protein of MTOR, complex 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.995
ENSPFOP00000016945	ENSPFOP00000019575	ENSPFOP00000016945	ENSPFOP00000019575	Regulatory associated protein of MTOR, complex 1.	Ras-related GTP binding A.	0.997
ENSPFOP00000016945	flcn	ENSPFOP00000016945	ENSPFOP00000009941	Regulatory associated protein of MTOR, complex 1.	Folliculin.	0.575
ENSPFOP00000016945	lamtor2	ENSPFOP00000016945	ENSPFOP00000011278	Regulatory associated protein of MTOR, complex 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.967
ENSPFOP00000016945	lamtor3	ENSPFOP00000016945	ENSPFOP00000005712	Regulatory associated protein of MTOR, complex 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.992
ENSPFOP00000016945	lamtor4	ENSPFOP00000016945	ENSPFOP00000015859	Regulatory associated protein of MTOR, complex 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.956
ENSPFOP00000016945	lamtor5	ENSPFOP00000016945	ENSPFOP00000012690	Regulatory associated protein of MTOR, complex 1.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.992
ENSPFOP00000016945	mlst8	ENSPFOP00000016945	ENSPFOP00000014281	Regulatory associated protein of MTOR, complex 1.	MTOR associated protein, LST8 homolog (S. cerevisiae).	0.999
ENSPFOP00000016945	mtor	ENSPFOP00000016945	ENSPFOP00000008461	Regulatory associated protein of MTOR, complex 1.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.999
ENSPFOP00000016945	rragc	ENSPFOP00000016945	ENSPFOP00000002015	Regulatory associated protein of MTOR, complex 1.	Ras-related GTP binding Ca.	0.990