nphp4 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

nphp4

Uncharacterized protein. (1441 aa)

Predicted Functional Partners:

nphp1

0.999

ENSPFOP00000013155

0.999

ENSPFOP00000004590

0.989

ENSPFOP00000007686

0.938

ENSPFOP00000021795

0.938

LOC103141115

0.844

fmnl2

0.844

ENSPFOP00000007187

0.844

LOC103142229

0.844

ENSPFOP00000027832

0.844

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000004590	ENSPFOP00000007686	ENSPFOP00000004590	ENSPFOP00000007686	Uncharacterized protein.	Uncharacterized protein.	0.969
ENSPFOP00000004590	ENSPFOP00000021795	ENSPFOP00000004590	ENSPFOP00000021795	Uncharacterized protein.	Uncharacterized protein.	0.969
ENSPFOP00000004590	nphp1	ENSPFOP00000004590	ENSPFOP00000007266	Uncharacterized protein.	Nephronophthisis 1.	0.789
ENSPFOP00000004590	nphp4	ENSPFOP00000004590	ENSPFOP00000002017	Uncharacterized protein.	Uncharacterized protein.	0.989
ENSPFOP00000007187	nphp4	ENSPFOP00000007187	ENSPFOP00000002017	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSPFOP00000007686	ENSPFOP00000004590	ENSPFOP00000007686	ENSPFOP00000004590	Uncharacterized protein.	Uncharacterized protein.	0.969
ENSPFOP00000007686	ENSPFOP00000013155	ENSPFOP00000007686	ENSPFOP00000013155	Uncharacterized protein.	RPGRIP1 like.	0.948
ENSPFOP00000007686	ENSPFOP00000021795	ENSPFOP00000007686	ENSPFOP00000021795	Uncharacterized protein.	Uncharacterized protein.	0.753
ENSPFOP00000007686	nphp1	ENSPFOP00000007686	ENSPFOP00000007266	Uncharacterized protein.	Nephronophthisis 1.	0.931
ENSPFOP00000007686	nphp4	ENSPFOP00000007686	ENSPFOP00000002017	Uncharacterized protein.	Uncharacterized protein.	0.938
ENSPFOP00000013155	ENSPFOP00000007686	ENSPFOP00000013155	ENSPFOP00000007686	RPGRIP1 like.	Uncharacterized protein.	0.948
ENSPFOP00000013155	ENSPFOP00000021795	ENSPFOP00000013155	ENSPFOP00000021795	RPGRIP1 like.	Uncharacterized protein.	0.948
ENSPFOP00000013155	nphp1	ENSPFOP00000013155	ENSPFOP00000007266	RPGRIP1 like.	Nephronophthisis 1.	0.999
ENSPFOP00000013155	nphp4	ENSPFOP00000013155	ENSPFOP00000002017	RPGRIP1 like.	Uncharacterized protein.	0.999
ENSPFOP00000021795	ENSPFOP00000004590	ENSPFOP00000021795	ENSPFOP00000004590	Uncharacterized protein.	Uncharacterized protein.	0.969
ENSPFOP00000021795	ENSPFOP00000007686	ENSPFOP00000021795	ENSPFOP00000007686	Uncharacterized protein.	Uncharacterized protein.	0.753
ENSPFOP00000021795	ENSPFOP00000013155	ENSPFOP00000021795	ENSPFOP00000013155	Uncharacterized protein.	RPGRIP1 like.	0.948
ENSPFOP00000021795	nphp1	ENSPFOP00000021795	ENSPFOP00000007266	Uncharacterized protein.	Nephronophthisis 1.	0.931
ENSPFOP00000021795	nphp4	ENSPFOP00000021795	ENSPFOP00000002017	Uncharacterized protein.	Uncharacterized protein.	0.938
ENSPFOP00000027832	nphp4	ENSPFOP00000027832	ENSPFOP00000002017	Uncharacterized protein.	Uncharacterized protein.	0.844