Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103149566SCD domain-containing protein. (1221 aa)    
Predicted Functional Partners:
ENSPFOP00000004704
Structural maintenance of chromosomes protein.
   
 0.992
smc1a
Structural maintenance of chromosomes protein.
   
 0.987
LOC103147589
Structural maintenance of chromosomes protein.
   
 0.987
LOC103154570
RAD21 cohesin complex component.
   
 0.978
LOC103135049
RAD21 cohesin complex component a.
   
 0.978
espl1
Extra spindle pole bodies like 1, separase.
   
 0.974
ENSPFOP00000004552
RAD21 cohesin complex component like 1.
   
 0.950
ENSPFOP00000030476
Rad21_Rec8 domain-containing protein.
   
 0.913
ENSPFOP00000030699
Uncharacterized protein.
   
 0.913
pds5a
PDS5 cohesin associated factor A.
   
 0.908
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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