STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ocel1Si:dkey-208k22.6. (553 aa)    
Predicted Functional Partners:
LOC103139421
Tight junction protein 1a; Belongs to the MAGUK family.
    
 0.928
ENSPFOP00000005566
Tight junction protein 1b; Belongs to the MAGUK family.
    
 0.928
marveld2
MARVEL domain containing 2a.
  
  
 
0.926
LOC103155675
MARVEL domain containing 2b.
  
  
 
0.909
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
    
 0.806
eaf2
ELL associated factor 2.
    
 0.768
eaf1
ELL associated factor 1.
    
 0.768
supt4h1
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.722
ENSPFOP00000011510
Transcription elongation factor SPT5.
    
 0.713
POLR2E
RNA polymerase II subunit E.
    
  0.703
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.