Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000002467Si:ch211-225b10.4. (1006 aa)    
Predicted Functional Partners:
casc4
Cancer susceptibility candidate 4.
      
 0.901
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
     
 0.870
rab2a
RAB2A, member RAS oncogene family.
    
 0.849
rab30
RAB30, member RAS oncogene family.
    
 
 0.831
vps54
VPS54 subunit of GARP complex.
     
 0.804
ENSPFOP00000018038
Tyrosyl-DNA phosphodiesterase 1.
    
   0.797
LOC103144292
Syntaxin 16.
     
 0.777
vps53
VPS53 subunit of GARP complex.
     
 0.771
vps52
VPS52 subunit of GARP complex.
     
 0.767
vps51
VPS51 subunit of GARP complex.
     
 0.767
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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