STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000002467Si:ch211-225b10.4. (1006 aa)    
Predicted Functional Partners:
cep350
Centrosomal protein 350.
   
    0.671
vps51
VPS51 subunit of GARP complex.
     
 0.650
vps54
VPS54 subunit of GARP complex.
     
 0.647
vps52
VPS52 subunit of GARP complex.
     
 0.640
tmf1
TATA element modulatory factor 1.
   
 
 0.596
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.589
ENSPFOP00000003286
RAB, member RAS oncogene family-like 6b.
    
 
 0.588
RUNDC1
RUN domain containing 1.
      
 0.557
cpd
Carboxypeptidase D, a.
      
 0.556
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
     
 0.552
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.