Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC103143442RBR-type E3 ubiquitin transferase. (714 aa)    
Predicted Functional Partners:
ENSPFOP00000004121
Trafficking protein particle complex 2.
    
 
 0.862
ENSPFOP00000004190
Trafficking protein particle complex 2.
    
 
 0.862
ubb
Ubiquitin B.
    
 0.814
LOC103129219
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 0.752
ENSPFOP00000005239
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 0.752
uckl1
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 0.752
rnf216
Ring finger protein 216.
    
 0.733
LOC103153773
Uncharacterized protein.
    
   0.711
LOC103146562
DIRAS family, GTP-binding RAS-like 1b.
    
   0.711
cgrrf1
Cell growth regulator with ring finger domain 1.
    
 0.685
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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