ENSPFOP00000003201 protein (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000003201	LOC103134577	ENSPFOP00000003201	ENSPFOP00000013613	Uncharacterized protein.	Ras homolog family member Ca.	0.705
ENSPFOP00000003201	LOC103138302	ENSPFOP00000003201	ENSPFOP00000019175	Uncharacterized protein.	Uncharacterized protein.	0.705
ENSPFOP00000003201	LOC103139126	ENSPFOP00000003201	ENSPFOP00000009002	Uncharacterized protein.	Nuclear envelope integral membrane protein 1.	0.679
ENSPFOP00000003201	LOC103144642	ENSPFOP00000003201	ENSPFOP00000005016	Uncharacterized protein.	Zgc:92429.	0.683
ENSPFOP00000003201	LOC103149604	ENSPFOP00000003201	ENSPFOP00000000695	Uncharacterized protein.	Uncharacterized protein.	0.705
ENSPFOP00000003201	LOC103149647	ENSPFOP00000003201	ENSPFOP00000005276	Uncharacterized protein.	Uncharacterized protein.	0.705
ENSPFOP00000003201	LOC103154003	ENSPFOP00000003201	ENSPFOP00000000151	Uncharacterized protein.	Uncharacterized protein.	0.705
ENSPFOP00000003201	LOC103154239	ENSPFOP00000003201	ENSPFOP00000017610	Uncharacterized protein.	Uncharacterized protein.	0.705
ENSPFOP00000003201	RHOB	ENSPFOP00000003201	ENSPFOP00000020736	Uncharacterized protein.	Ras homolog family member B.	0.705
ENSPFOP00000003201	gtf2e2	ENSPFOP00000003201	ENSPFOP00000016483	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.685
LOC103134577	ENSPFOP00000003201	ENSPFOP00000013613	ENSPFOP00000003201	Ras homolog family member Ca.	Uncharacterized protein.	0.705
LOC103138302	ENSPFOP00000003201	ENSPFOP00000019175	ENSPFOP00000003201	Uncharacterized protein.	Uncharacterized protein.	0.705
LOC103139126	ENSPFOP00000003201	ENSPFOP00000009002	ENSPFOP00000003201	Nuclear envelope integral membrane protein 1.	Uncharacterized protein.	0.679
LOC103139126	gtf2e2	ENSPFOP00000009002	ENSPFOP00000016483	Nuclear envelope integral membrane protein 1.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.735
LOC103144642	ENSPFOP00000003201	ENSPFOP00000005016	ENSPFOP00000003201	Zgc:92429.	Uncharacterized protein.	0.683
LOC103149604	ENSPFOP00000003201	ENSPFOP00000000695	ENSPFOP00000003201	Uncharacterized protein.	Uncharacterized protein.	0.705
LOC103149647	ENSPFOP00000003201	ENSPFOP00000005276	ENSPFOP00000003201	Uncharacterized protein.	Uncharacterized protein.	0.705
LOC103154003	ENSPFOP00000003201	ENSPFOP00000000151	ENSPFOP00000003201	Uncharacterized protein.	Uncharacterized protein.	0.705
LOC103154239	ENSPFOP00000003201	ENSPFOP00000017610	ENSPFOP00000003201	Uncharacterized protein.	Uncharacterized protein.	0.705
RHOB	ENSPFOP00000003201	ENSPFOP00000020736	ENSPFOP00000003201	Ras homolog family member B.	Uncharacterized protein.	0.705