Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpne4Copine IVb. (554 aa)    
Predicted Functional Partners:
ENSPFOP00000016828
Ribonuclease H2, subunit B.
   
 
 0.633
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.580
ENSPFOP00000007885
Rabaptin, RAB GTPase binding effector protein 2.
    
   0.495
VAMP3
Vesicle associated membrane protein 3.
   
 
  0.445
ENSPFOP00000002729
Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.
     
 0.439
glrx5
Glutaredoxin 5 homolog (S. cerevisiae).
      
 0.424
ENSPFOP00000002453
Family with sequence similarity 192 member A.
      
 0.408
prkrip1
PRKR interacting protein 1.
      
 0.408
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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