Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000003452Homeobox domain-containing protein. (268 aa)    
Predicted Functional Partners:
msx1
Muscle segment homeobox 1a.
   
 
 0.921
dlx5
Distal-less homeobox 5a.
    
 0.787
LOC103134039
Muscle segment homeobox 3.
   
 
 0.766
LOC103153586
Runt-related transcription factor.
    
 0.746
LOC103130586
Runt-related transcription factor.
    
 0.746
ENSPFOP00000016177
Runt-related transcription factor.
    
 0.746
ENSPFOP00000002885
Interferon regulatory factor 3.
      
 0.737
ENSPFOP00000008302
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
 0.730
hoxc13
Homeobox C13a.
   
  
 0.726
LOC103153465
Necdin-like 2.
    
 
 0.722
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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