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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000003545WAPL cohesin release factor b. (1200 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
    0.999
pds5a
PDS5 cohesin associated factor A.
   
 0.970
ENSPFOP00000004704
Structural maintenance of chromosomes protein.
   
 0.956
pds5b
PDS5 cohesin associated factor B.
   
 0.953
smc1a
Structural maintenance of chromosomes protein.
   
 0.924
LOC103135049
RAD21 cohesin complex component a.
    
 0.905
ENSPFOP00000001674
Cell division cycle associated 5.
    
 0.880
LOC103147589
Structural maintenance of chromosomes protein.
   
 0.874
LOC103154570
RAD21 cohesin complex component.
    
 0.870
ENSPFOP00000004552
RAD21 cohesin complex component like 1.
    
 0.870
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.