Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DMDDystrophin. (1980 aa)    
Predicted Functional Partners:
LOC103129995
Dystroglycan 1.
    
 0.855
LOC103141828
Peptidase S72 domain-containing protein.
    
 0.855
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
   
 
 0.793
ENSPFOP00000015192
Sarcoglycan, alpha.
    
 0.791
SNTA1
Syntrophin alpha 1.
    
 0.790
sntb1
Syntrophin, basic 1.
    
 0.790
sntb2
Syntrophin, beta 2.
    
 0.790
sspn
Sarcospan (Kras oncogene-associated gene).
    
 0.785
sntg2
Syntrophin, gamma 2.
    
 0.783
ENSPFOP00000014346
Syntrophin, gamma 1.
    
 0.783
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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