Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
barhl1Homeobox domain-containing protein. (327 aa)    
Predicted Functional Partners:
ptf1a
Pancreas associated transcription factor 1a.
      
 0.639
ENSPFOP00000012479
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
   0.527
ENSPFOP00000019047
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
   
  0.501
ENSPFOP00000013582
Forkhead box N4.
   
 
 0.463
ENSPFOP00000019214
Atonal bHLH transcription factor 1a.
   
 
 0.442
C1orf146
Chromosome 1 open reading frame 146.
      
 0.413
fancl
FA complementation group L.
      
 0.406
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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