Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ENSPFOP00000004091IF rod domain-containing protein; Belongs to the intermediate filament family. (431 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.757
ino80e
INO80 complex subunit E.
   
 0.709
ranbp2
RAN binding protein 2.
    
 0.641
cpsf1
Cleavage and polyadenylation specific factor 1.
    
  0.626
ENSPFOP00000011809
WD repeat domain 33.
    
  0.604
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.597
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
  0.597
sympk
Symplekin.
    
  0.592
LOC103137772
FIP1 like 1b (S. cerevisiae).
    
  0.581
ENSPFOP00000010679
Eukaryotic translation elongation factor 1 gamma.
    
 0.560
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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