STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000004202X-ray repair complementing defective repair in Chinese hamster cells 4. (322 aa)    
Predicted Functional Partners:
kptn
Kaptin (actin binding protein).
    
 0.930
SZT2
SZT2 subunit of KICSTOR complex.
    
 0.925
nprl2
NPR2 like, GATOR1 complex subunit.
   
 0.917
wdr24
WD repeat domain 24.
    
 0.911
wdr59
WD repeat domain 59.
    
 0.910
ENSPFOP00000014268
DEP domain containing 5.
    
 0.910
spcs2
Signal peptidase complex subunit 2.
   
 0.909
spcs1
Signal peptidase complex subunit 1.
   
 0.900
spcs3
Signal peptidase complex subunit 3.
   
 0.899
lig4
DNA ligase.
    
 0.800
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.