STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000004232Matrin-type domain-containing protein. (713 aa)    
Predicted Functional Partners:
ENSPFOP00000013648
Heterogeneous nuclear ribonucleoprotein K, like.
   
 
 0.879
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 
 0.879
LOC103146288
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 
 0.759
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.745
ewsr1
EWS RNA-binding protein 1b.
   
 
 0.702
ENSPFOP00000014516
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
  0.663
ENSPFOP00000016493
Non-POU domain containing, octamer-binding.
   
 
 0.660
LOC103147705
POU domain protein.
    
   0.659
ENSPFOP00000003336
Paraspeckle component 1.
   
 
 0.655
ccnf
Cyclin F; Belongs to the cyclin family.
    
 0.646
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.