LOC103144227 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103144227

Inhibitor of DNA binding 3. (116 aa)

Predicted Functional Partners:

ENSPFOP00000020767

0.971

ENSPFOP00000010509

0.965

id2

0.830

LOC103149824

0.590

TCF3

0.590

LOC103151249

0.590

tcf12

0.590

TCF4

0.590

LOC103155692

0.574

ENSPFOP00000026362

0.556

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000010509	ENSPFOP00000020767	ENSPFOP00000010509	ENSPFOP00000020767	Inhibitor of DNA binding 4.	Inhibitor of DNA binding 1, HLH protein.	0.960
ENSPFOP00000010509	LOC103144227	ENSPFOP00000010509	ENSPFOP00000004235	Inhibitor of DNA binding 4.	Inhibitor of DNA binding 3.	0.965
ENSPFOP00000010509	LOC103149824	ENSPFOP00000010509	ENSPFOP00000001775	Inhibitor of DNA binding 4.	Transcription factor 3b.	0.650
ENSPFOP00000010509	LOC103151249	ENSPFOP00000010509	ENSPFOP00000016069	Inhibitor of DNA binding 4.	Transcription factor 3a.	0.650
ENSPFOP00000010509	LOC103155692	ENSPFOP00000010509	ENSPFOP00000004020	Inhibitor of DNA binding 4.	BHLH domain-containing protein.	0.650
ENSPFOP00000010509	TCF3	ENSPFOP00000010509	ENSPFOP00000013618	Inhibitor of DNA binding 4.	Transcription factor 3a.	0.650
ENSPFOP00000010509	TCF4	ENSPFOP00000010509	ENSPFOP00000030042	Inhibitor of DNA binding 4.	Transcription factor 4.	0.650
ENSPFOP00000010509	id2	ENSPFOP00000010509	ENSPFOP00000011885	Inhibitor of DNA binding 4.	Inhibitor of DNA binding 2a.	0.694
ENSPFOP00000010509	tcf12	ENSPFOP00000010509	ENSPFOP00000023414	Inhibitor of DNA binding 4.	Transcription factor 12.	0.650
ENSPFOP00000020767	ENSPFOP00000010509	ENSPFOP00000020767	ENSPFOP00000010509	Inhibitor of DNA binding 1, HLH protein.	Inhibitor of DNA binding 4.	0.960
ENSPFOP00000020767	ENSPFOP00000026362	ENSPFOP00000020767	ENSPFOP00000026362	Inhibitor of DNA binding 1, HLH protein.	Endothelial cell-specific molecule 1.	0.509
ENSPFOP00000020767	LOC103144227	ENSPFOP00000020767	ENSPFOP00000004235	Inhibitor of DNA binding 1, HLH protein.	Inhibitor of DNA binding 3.	0.971
ENSPFOP00000020767	LOC103149824	ENSPFOP00000020767	ENSPFOP00000001775	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 3b.	0.760
ENSPFOP00000020767	LOC103151249	ENSPFOP00000020767	ENSPFOP00000016069	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 3a.	0.760
ENSPFOP00000020767	LOC103155692	ENSPFOP00000020767	ENSPFOP00000004020	Inhibitor of DNA binding 1, HLH protein.	BHLH domain-containing protein.	0.733
ENSPFOP00000020767	TCF3	ENSPFOP00000020767	ENSPFOP00000013618	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 3a.	0.760
ENSPFOP00000020767	TCF4	ENSPFOP00000020767	ENSPFOP00000030042	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 4.	0.760
ENSPFOP00000020767	id2	ENSPFOP00000020767	ENSPFOP00000011885	Inhibitor of DNA binding 1, HLH protein.	Inhibitor of DNA binding 2a.	0.813
ENSPFOP00000020767	tcf12	ENSPFOP00000020767	ENSPFOP00000023414	Inhibitor of DNA binding 1, HLH protein.	Transcription factor 12.	0.760
ENSPFOP00000026362	ENSPFOP00000020767	ENSPFOP00000026362	ENSPFOP00000020767	Endothelial cell-specific molecule 1.	Inhibitor of DNA binding 1, HLH protein.	0.509