Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
chdhCholine dehydrogenase. (605 aa)    
Predicted Functional Partners:
aldh7a1
Aldehyde dehydrogenase 7 family, member A1; Belongs to the aldehyde dehydrogenase family.
  
 
 0.981
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
   
 0.958
ENSPFOP00000001412
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.958
ift81
Intraflagellar transport 81 homolog.
    
 0.953
ift88
Intraflagellar transport 88 homolog.
   
 0.953
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.953
ttc26
Tetratricopeptide repeat domain 26.
    
 0.953
ift172
Intraflagellar transport 172.
    
 0.952
LOC103132208
Fleer.
    
 0.951
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.949
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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