abitram protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000017668	abitram	ENSPFOP00000017668	ENSPFOP00000004261	Ferric-chelate reductase 1-like.	Actin binding transcription modulator.	0.716
LOC103131103	abitram	ENSPFOP00000011169	ENSPFOP00000004261	Armadillo repeat-containing protein 1.	Actin binding transcription modulator.	0.676
abitram	ENSPFOP00000017668	ENSPFOP00000004261	ENSPFOP00000017668	Actin binding transcription modulator.	Ferric-chelate reductase 1-like.	0.716
abitram	LOC103131103	ENSPFOP00000004261	ENSPFOP00000011169	Actin binding transcription modulator.	Armadillo repeat-containing protein 1.	0.676
abitram	armc1	ENSPFOP00000004261	ENSPFOP00000005949	Actin binding transcription modulator.	Armadillo repeat-containing protein 1.	0.676
abitram	elp2	ENSPFOP00000004261	ENSPFOP00000005023	Actin binding transcription modulator.	Elongator acetyltransferase complex subunit 2.	0.678
abitram	gpn3	ENSPFOP00000004261	ENSPFOP00000019786	Actin binding transcription modulator.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.715
abitram	hsdl1	ENSPFOP00000004261	ENSPFOP00000002077	Actin binding transcription modulator.	Hydroxysteroid dehydrogenase like 1.	0.681
abitram	mrps21	ENSPFOP00000004261	ENSPFOP00000008654	Actin binding transcription modulator.	Mitochondrial ribosomal protein S21.	0.675
abitram	pus10	ENSPFOP00000004261	ENSPFOP00000000982	Actin binding transcription modulator.	Pseudouridine synthase 10.	0.956
abitram	sla	ENSPFOP00000004261	ENSPFOP00000004175	Actin binding transcription modulator.	Src like adaptor 1a.	0.719
abitram	wdyhv1	ENSPFOP00000004261	ENSPFOP00000008149	Actin binding transcription modulator.	WDYHV motif containing 1.	0.880
armc1	abitram	ENSPFOP00000005949	ENSPFOP00000004261	Armadillo repeat-containing protein 1.	Actin binding transcription modulator.	0.676
elp2	abitram	ENSPFOP00000005023	ENSPFOP00000004261	Elongator acetyltransferase complex subunit 2.	Actin binding transcription modulator.	0.678
elp2	sla	ENSPFOP00000005023	ENSPFOP00000004175	Elongator acetyltransferase complex subunit 2.	Src like adaptor 1a.	0.488
elp2	wdyhv1	ENSPFOP00000005023	ENSPFOP00000008149	Elongator acetyltransferase complex subunit 2.	WDYHV motif containing 1.	0.675
gpn3	abitram	ENSPFOP00000019786	ENSPFOP00000004261	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Actin binding transcription modulator.	0.715
gpn3	mrps21	ENSPFOP00000019786	ENSPFOP00000008654	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Mitochondrial ribosomal protein S21.	0.573
hsdl1	abitram	ENSPFOP00000002077	ENSPFOP00000004261	Hydroxysteroid dehydrogenase like 1.	Actin binding transcription modulator.	0.681
mrps21	abitram	ENSPFOP00000008654	ENSPFOP00000004261	Mitochondrial ribosomal protein S21.	Actin binding transcription modulator.	0.675