LOC103142438 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103142438

Exocyst complex component 3-like 1. (778 aa)

Predicted Functional Partners:

exoc5

0.987

exoc2

0.986

exoc4

0.986

exoc1

0.986

exoc8

0.973

ENSPFOP00000012348

0.971

LOC103156771

0.969

exoc6

0.969

LOC103137775

0.865

ENSPFOP00000012483

0.768

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000012348	ENSPFOP00000012483	ENSPFOP00000012348	ENSPFOP00000012483	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	RAB3A interacting protein (rabin3)-like 1.	0.793
ENSPFOP00000012348	LOC103137775	ENSPFOP00000012348	ENSPFOP00000015191	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Si:dkey-245p14.4.	0.977
ENSPFOP00000012348	LOC103142438	ENSPFOP00000012348	ENSPFOP00000004345	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 3-like 1.	0.971
ENSPFOP00000012348	LOC103156771	ENSPFOP00000012348	ENSPFOP00000000166	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.985
ENSPFOP00000012348	exoc1	ENSPFOP00000012348	ENSPFOP00000017266	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 1.	0.999
ENSPFOP00000012348	exoc2	ENSPFOP00000012348	ENSPFOP00000000577	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.999
ENSPFOP00000012348	exoc4	ENSPFOP00000012348	ENSPFOP00000001763	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 4.	0.999
ENSPFOP00000012348	exoc5	ENSPFOP00000012348	ENSPFOP00000001642	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 5.	0.999
ENSPFOP00000012348	exoc6	ENSPFOP00000012348	ENSPFOP00000009808	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.985
ENSPFOP00000012348	exoc8	ENSPFOP00000012348	ENSPFOP00000002796	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 8.	0.999
ENSPFOP00000012483	ENSPFOP00000012348	ENSPFOP00000012483	ENSPFOP00000012348	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.793
ENSPFOP00000012483	LOC103137775	ENSPFOP00000012483	ENSPFOP00000015191	RAB3A interacting protein (rabin3)-like 1.	Si:dkey-245p14.4.	0.794
ENSPFOP00000012483	LOC103142438	ENSPFOP00000012483	ENSPFOP00000004345	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component 3-like 1.	0.768
ENSPFOP00000012483	LOC103156771	ENSPFOP00000012483	ENSPFOP00000000166	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.892
ENSPFOP00000012483	exoc1	ENSPFOP00000012483	ENSPFOP00000017266	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component 1.	0.825
ENSPFOP00000012483	exoc2	ENSPFOP00000012483	ENSPFOP00000000577	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.827
ENSPFOP00000012483	exoc4	ENSPFOP00000012483	ENSPFOP00000001763	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component 4.	0.840
ENSPFOP00000012483	exoc5	ENSPFOP00000012483	ENSPFOP00000001642	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component 5.	0.881
ENSPFOP00000012483	exoc6	ENSPFOP00000012483	ENSPFOP00000009808	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.892
ENSPFOP00000012483	exoc8	ENSPFOP00000012483	ENSPFOP00000002796	RAB3A interacting protein (rabin3)-like 1.	Exocyst complex component 8.	0.790