ENSPFOP00000004372 protein (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001219	ENSPFOP00000004372	ENSPFOP00000001219	ENSPFOP00000004372	Hydroxysteroid dehydrogenase like 2.	Uncharacterized protein.	0.666
ENSPFOP00000001219	ENSPFOP00000009158	ENSPFOP00000001219	ENSPFOP00000009158	Hydroxysteroid dehydrogenase like 2.	Carrier domain-containing protein.	0.501
ENSPFOP00000001219	ENSPFOP00000012392	ENSPFOP00000001219	ENSPFOP00000012392	Hydroxysteroid dehydrogenase like 2.	Coiled-coil domain containing 57.	0.501
ENSPFOP00000001219	ENSPFOP00000028053	ENSPFOP00000001219	ENSPFOP00000028053	Hydroxysteroid dehydrogenase like 2.	AMP-binding domain-containing protein.	0.701
ENSPFOP00000001219	LOC103140579	ENSPFOP00000001219	ENSPFOP00000009198	Hydroxysteroid dehydrogenase like 2.	Si:dkey-61p9.11.	0.501
ENSPFOP00000001219	LOC107836512	ENSPFOP00000001219	ENSPFOP00000014125	Hydroxysteroid dehydrogenase like 2.	Carrier domain-containing protein.	0.501
ENSPFOP00000001219	med14	ENSPFOP00000001219	ENSPFOP00000014194	Hydroxysteroid dehydrogenase like 2.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.578
ENSPFOP00000001219	ndufab1	ENSPFOP00000001219	ENSPFOP00000008822	Hydroxysteroid dehydrogenase like 2.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.736
ENSPFOP00000001219	palb2	ENSPFOP00000001219	ENSPFOP00000022812	Hydroxysteroid dehydrogenase like 2.	PALB2_WD40 domain-containing protein.	0.736
ENSPFOP00000004372	ENSPFOP00000001219	ENSPFOP00000004372	ENSPFOP00000001219	Uncharacterized protein.	Hydroxysteroid dehydrogenase like 2.	0.666
ENSPFOP00000004372	ENSPFOP00000009158	ENSPFOP00000004372	ENSPFOP00000009158	Uncharacterized protein.	Carrier domain-containing protein.	0.617
ENSPFOP00000004372	ENSPFOP00000012392	ENSPFOP00000004372	ENSPFOP00000012392	Uncharacterized protein.	Coiled-coil domain containing 57.	0.617
ENSPFOP00000004372	ENSPFOP00000028053	ENSPFOP00000004372	ENSPFOP00000028053	Uncharacterized protein.	AMP-binding domain-containing protein.	0.700
ENSPFOP00000004372	LOC103140579	ENSPFOP00000004372	ENSPFOP00000009198	Uncharacterized protein.	Si:dkey-61p9.11.	0.617
ENSPFOP00000004372	LOC107836512	ENSPFOP00000004372	ENSPFOP00000014125	Uncharacterized protein.	Carrier domain-containing protein.	0.617
ENSPFOP00000004372	med14	ENSPFOP00000004372	ENSPFOP00000014194	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.614
ENSPFOP00000004372	ndufab1	ENSPFOP00000004372	ENSPFOP00000008822	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.659
ENSPFOP00000004372	palb2	ENSPFOP00000004372	ENSPFOP00000022812	Uncharacterized protein.	PALB2_WD40 domain-containing protein.	0.659
ENSPFOP00000004372	ranbp2	ENSPFOP00000004372	ENSPFOP00000007571	Uncharacterized protein.	RAN binding protein 2.	0.657
ENSPFOP00000009158	ENSPFOP00000001219	ENSPFOP00000009158	ENSPFOP00000001219	Carrier domain-containing protein.	Hydroxysteroid dehydrogenase like 2.	0.501