LOC107833921 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC107833921

PPC domain-containing protein. (148 aa)

Predicted Functional Partners:

TGDS

0.884

pgm3

0.790

pgm2l1

0.790

ENSPFOP00000011618

0.790

edf1

0.781

LOC103130258

0.746

eif2b3

0.746

LOC103135540

0.746

gmppa

0.746

gmppb

0.746

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000011618	LOC103130258	ENSPFOP00000011618	ENSPFOP00000000947	Phosphoglucomutase 2.	Zgc:136439.	0.742
ENSPFOP00000011618	LOC103135540	ENSPFOP00000011618	ENSPFOP00000007206	Phosphoglucomutase 2.	Glutamine-fructose-6-phosphate transaminase 2.	0.743
ENSPFOP00000011618	LOC107833921	ENSPFOP00000011618	ENSPFOP00000004516	Phosphoglucomutase 2.	PPC domain-containing protein.	0.790
ENSPFOP00000011618	TGDS	ENSPFOP00000011618	ENSPFOP00000004441	Phosphoglucomutase 2.	TDP-glucose 4,6-dehydratase.	0.711
ENSPFOP00000011618	eif2b3	ENSPFOP00000011618	ENSPFOP00000005980	Phosphoglucomutase 2.	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	0.742
ENSPFOP00000011618	gmppa	ENSPFOP00000011618	ENSPFOP00000010820	Phosphoglucomutase 2.	GDP-mannose pyrophosphorylase Ab.	0.764
ENSPFOP00000011618	gmppb	ENSPFOP00000011618	ENSPFOP00000011979	Phosphoglucomutase 2.	GDP-mannose pyrophosphorylase B.	0.806
ENSPFOP00000011618	pgm2l1	ENSPFOP00000011618	ENSPFOP00000010745	Phosphoglucomutase 2.	Phosphoglucomutase 2-like 1.	0.902
ENSPFOP00000011618	pgm3	ENSPFOP00000011618	ENSPFOP00000010017	Phosphoglucomutase 2.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.	0.711
LOC103130258	ENSPFOP00000011618	ENSPFOP00000000947	ENSPFOP00000011618	Zgc:136439.	Phosphoglucomutase 2.	0.742
LOC103130258	LOC103135540	ENSPFOP00000000947	ENSPFOP00000007206	Zgc:136439.	Glutamine-fructose-6-phosphate transaminase 2.	0.678
LOC103130258	LOC107833921	ENSPFOP00000000947	ENSPFOP00000004516	Zgc:136439.	PPC domain-containing protein.	0.746
LOC103130258	TGDS	ENSPFOP00000000947	ENSPFOP00000004441	Zgc:136439.	TDP-glucose 4,6-dehydratase.	0.787
LOC103130258	pgm2l1	ENSPFOP00000000947	ENSPFOP00000010745	Zgc:136439.	Phosphoglucomutase 2-like 1.	0.742
LOC103130258	pgm3	ENSPFOP00000000947	ENSPFOP00000010017	Zgc:136439.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.	0.742
LOC103135540	ENSPFOP00000011618	ENSPFOP00000007206	ENSPFOP00000011618	Glutamine-fructose-6-phosphate transaminase 2.	Phosphoglucomutase 2.	0.743
LOC103135540	LOC103130258	ENSPFOP00000007206	ENSPFOP00000000947	Glutamine-fructose-6-phosphate transaminase 2.	Zgc:136439.	0.678
LOC103135540	LOC107833921	ENSPFOP00000007206	ENSPFOP00000004516	Glutamine-fructose-6-phosphate transaminase 2.	PPC domain-containing protein.	0.746
LOC103135540	eif2b3	ENSPFOP00000007206	ENSPFOP00000005980	Glutamine-fructose-6-phosphate transaminase 2.	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	0.678
LOC103135540	gmppa	ENSPFOP00000007206	ENSPFOP00000010820	Glutamine-fructose-6-phosphate transaminase 2.	GDP-mannose pyrophosphorylase Ab.	0.678