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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab39bUncharacterized protein. (213 aa)    
Predicted Functional Partners:
ENSPFOP00000001465
Zgc:100846.
    
 0.962
smcr8
Smith-Magenis syndrome chromosome region, candidate 8a.
    
 0.957
sqstm1
Sequestosome 1.
    
 0.956
LOC103136363
UDENN FLCN/SMCR8-type domain-containing protein.
    
 0.944
LOC103146060
RAB8A, member RAS oncogene family.
  
  
 
0.884
ENSPFOP00000004104
Uncharacterized protein.
  
  
 
0.884
ENSPFOP00000012483
RAB3A interacting protein (rabin3)-like 1.
    
 0.730
ENSPFOP00000028948
RAB3A interacting protein (rabin3).
    
 0.730
LOC103141076
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.704
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.682
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.