LOC103151787 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103151787

Si:dkey-48p11.3. (175 aa)

Predicted Functional Partners:

ENSPFOP00000004136

0.982

ENSPFOP00000017386

0.964

ruvbl2

0.897

ruvbl1

0.874

ENSPFOP00000001618

0.854

LOC103130831

0.718

gapdhs

0.697

gapdh

0.697

GNAZ

0.691

rwdd1

0.652

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001618	LOC103151787	ENSPFOP00000001618	ENSPFOP00000004606	Uncharacterized protein.	Si:dkey-48p11.3.	0.854
ENSPFOP00000004136	LOC103151787	ENSPFOP00000004136	ENSPFOP00000004606	NOP58 ribonucleoprotein homolog (yeast).	Si:dkey-48p11.3.	0.982
ENSPFOP00000004136	ruvbl1	ENSPFOP00000004136	ENSPFOP00000030942	NOP58 ribonucleoprotein homolog (yeast).	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.983
ENSPFOP00000004136	ruvbl2	ENSPFOP00000004136	ENSPFOP00000012242	NOP58 ribonucleoprotein homolog (yeast).	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.980
ENSPFOP00000017386	LOC103151787	ENSPFOP00000017386	ENSPFOP00000004606	RNA polymerase II associated protein 2.	Si:dkey-48p11.3.	0.964
ENSPFOP00000017386	ruvbl1	ENSPFOP00000017386	ENSPFOP00000030942	RNA polymerase II associated protein 2.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.682
ENSPFOP00000017386	ruvbl2	ENSPFOP00000017386	ENSPFOP00000012242	RNA polymerase II associated protein 2.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.793
GNAZ	LOC103151787	ENSPFOP00000019847	ENSPFOP00000004606	G protein subunit alpha z.	Si:dkey-48p11.3.	0.691
LOC103130831	LOC103151787	ENSPFOP00000000266	ENSPFOP00000004606	Uncharacterized protein.	Si:dkey-48p11.3.	0.718
LOC103151787	ENSPFOP00000001618	ENSPFOP00000004606	ENSPFOP00000001618	Si:dkey-48p11.3.	Uncharacterized protein.	0.854
LOC103151787	ENSPFOP00000004136	ENSPFOP00000004606	ENSPFOP00000004136	Si:dkey-48p11.3.	NOP58 ribonucleoprotein homolog (yeast).	0.982
LOC103151787	ENSPFOP00000017386	ENSPFOP00000004606	ENSPFOP00000017386	Si:dkey-48p11.3.	RNA polymerase II associated protein 2.	0.964
LOC103151787	GNAZ	ENSPFOP00000004606	ENSPFOP00000019847	Si:dkey-48p11.3.	G protein subunit alpha z.	0.691
LOC103151787	LOC103130831	ENSPFOP00000004606	ENSPFOP00000000266	Si:dkey-48p11.3.	Uncharacterized protein.	0.718
LOC103151787	gapdh	ENSPFOP00000004606	ENSPFOP00000025609	Si:dkey-48p11.3.	Glyceraldehyde-3-phosphate dehydrogenase.	0.697
LOC103151787	gapdhs	ENSPFOP00000004606	ENSPFOP00000018989	Si:dkey-48p11.3.	Glyceraldehyde-3-phosphate dehydrogenase.	0.697
LOC103151787	ruvbl1	ENSPFOP00000004606	ENSPFOP00000030942	Si:dkey-48p11.3.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.874
LOC103151787	ruvbl2	ENSPFOP00000004606	ENSPFOP00000012242	Si:dkey-48p11.3.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.897
LOC103151787	rwdd1	ENSPFOP00000004606	ENSPFOP00000018646	Si:dkey-48p11.3.	RWD domain containing 1.	0.652
gapdh	LOC103151787	ENSPFOP00000025609	ENSPFOP00000004606	Glyceraldehyde-3-phosphate dehydrogenase.	Si:dkey-48p11.3.	0.697