STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000004858MINDY lysine 48 deubiquitinase 2. (525 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
   0.821
ubb
Ubiquitin B.
    
   0.821
ENSPFOP00000024466
Ubiquitin-like domain-containing protein.
    
   0.799
rps27a
Ribosomal protein S27a.
    
   0.765
ENSPFOP00000001211
Methylmalonyl CoA mutase.
    
 0.733
setd4
SET domain containing 4.
    
 0.733
setd3
Protein-histidine N-methyltransferase.
    
 0.733
ENSPFOP00000029102
Uncharacterized protein.
    
   0.686
rnf126
RING-type domain-containing protein.
    
  0.600
ENSPFOP00000004894
Uncharacterized protein.
   
   0.600
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.