Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
alx4Uncharacterized protein. (373 aa)    
Predicted Functional Partners:
LOC103155772
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.643
ENSPFOP00000002826
Trichorhinophalangeal syndrome I.
    
 0.598
ENSPFOP00000015912
WD repeat domain 90.
    
   0.554
ENSPFOP00000004785
Homeobox domain-containing protein.
   
  0.500
LOC103150493
LIM-domain binding 1b.
    
 0.478
LOC103152234
LIM domain binding 1a.
    
 0.478
LOC103137320
LIM domain binding 2a.
    
 0.478
sp7
Sp7 transcription factor.
    
 
 0.464
figla
Folliculogenesis specific bHLH transcription factor.
   
 0.449
hand2
Heart and neural crest derivatives expressed 2.
    
 0.413
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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