STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDZRN4PDZ domain containing ring finger 4. (857 aa)    
Predicted Functional Partners:
ENSPFOP00000004198
Baculoviral IAP repeat containing 6.
   
 0.859
ENSPFOP00000015763
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.837
ENSPFOP00000003361
Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.
   
 0.775
ripk4
Receptor-interacting serine-threonine kinase 4.
   
 0.775
LOC103132215
Ubiquitin-like domain-containing protein.
    
 0.766
rps27a
Ribosomal protein S27a.
    
 0.766
LOC103139106
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.757
tradd
Tnfrsf1a-associated via death domain.
    
 0.749
zfand4
Zinc finger, AN1-type domain 4.
    
 0.727
ecsit
ECSIT signalling integrator.
    
 0.714
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.