samd4b protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

samd4b

Sterile alpha motif domain containing 4B. (673 aa)

Predicted Functional Partners:

LOC103150069

0.819

ENSPFOP00000020659

0.819

ENSPFOP00000000479

0.760

LOC103145207

0.760

LOC103145510

0.760

golga3

0.688

LOC103135533

0.682

cnot6l

0.682

ENSPFOP00000022304

0.682

carhsp1

0.667

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000000479	samd4b	ENSPFOP00000000479	ENSPFOP00000005151	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	Sterile alpha motif domain containing 4B.	0.760
ENSPFOP00000020659	ENSPFOP00000022304	ENSPFOP00000020659	ENSPFOP00000022304	Nanos homolog 1; Belongs to the nanos family.	Uncharacterized protein.	0.595
ENSPFOP00000020659	LOC103135533	ENSPFOP00000020659	ENSPFOP00000006390	Nanos homolog 1; Belongs to the nanos family.	CCR4-NOT transcription complex, subunit 6a.	0.595
ENSPFOP00000020659	cnot6l	ENSPFOP00000020659	ENSPFOP00000013221	Nanos homolog 1; Belongs to the nanos family.	CCR4-NOT transcription complex, subunit 6-like.	0.595
ENSPFOP00000020659	samd4b	ENSPFOP00000020659	ENSPFOP00000005151	Nanos homolog 1; Belongs to the nanos family.	Sterile alpha motif domain containing 4B.	0.819
ENSPFOP00000022304	ENSPFOP00000020659	ENSPFOP00000022304	ENSPFOP00000020659	Uncharacterized protein.	Nanos homolog 1; Belongs to the nanos family.	0.595
ENSPFOP00000022304	LOC103150069	ENSPFOP00000022304	ENSPFOP00000020134	Uncharacterized protein.	Nanos-type domain-containing protein; Belongs to the nanos family.	0.595
ENSPFOP00000022304	samd4b	ENSPFOP00000022304	ENSPFOP00000005151	Uncharacterized protein.	Sterile alpha motif domain containing 4B.	0.682
LOC103135533	ENSPFOP00000020659	ENSPFOP00000006390	ENSPFOP00000020659	CCR4-NOT transcription complex, subunit 6a.	Nanos homolog 1; Belongs to the nanos family.	0.595
LOC103135533	LOC103150069	ENSPFOP00000006390	ENSPFOP00000020134	CCR4-NOT transcription complex, subunit 6a.	Nanos-type domain-containing protein; Belongs to the nanos family.	0.595
LOC103135533	cnot6l	ENSPFOP00000006390	ENSPFOP00000013221	CCR4-NOT transcription complex, subunit 6a.	CCR4-NOT transcription complex, subunit 6-like.	0.901
LOC103135533	samd4b	ENSPFOP00000006390	ENSPFOP00000005151	CCR4-NOT transcription complex, subunit 6a.	Sterile alpha motif domain containing 4B.	0.682
LOC103145207	LOC103145510	ENSPFOP00000011557	ENSPFOP00000015942	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.900
LOC103145207	samd4b	ENSPFOP00000011557	ENSPFOP00000005151	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Sterile alpha motif domain containing 4B.	0.760
LOC103145510	LOC103145207	ENSPFOP00000015942	ENSPFOP00000011557	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.900
LOC103145510	samd4b	ENSPFOP00000015942	ENSPFOP00000005151	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Sterile alpha motif domain containing 4B.	0.760
LOC103150069	ENSPFOP00000022304	ENSPFOP00000020134	ENSPFOP00000022304	Nanos-type domain-containing protein; Belongs to the nanos family.	Uncharacterized protein.	0.595
LOC103150069	LOC103135533	ENSPFOP00000020134	ENSPFOP00000006390	Nanos-type domain-containing protein; Belongs to the nanos family.	CCR4-NOT transcription complex, subunit 6a.	0.595
LOC103150069	cnot6l	ENSPFOP00000020134	ENSPFOP00000013221	Nanos-type domain-containing protein; Belongs to the nanos family.	CCR4-NOT transcription complex, subunit 6-like.	0.595
LOC103150069	samd4b	ENSPFOP00000020134	ENSPFOP00000005151	Nanos-type domain-containing protein; Belongs to the nanos family.	Sterile alpha motif domain containing 4B.	0.819