trmt10b protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

trmt10b

tRNA methyltransferase 10B. (315 aa)

Predicted Functional Partners:

hsd17b10

0.910

mettl1

0.886

mrps31

0.879

ENSPFOP00000030063

0.861

LOC103141776

0.858

ENSPFOP00000011710

0.858

ENSPFOP00000016489

0.850

mrps5

0.849

mrps28

0.841

mrps11

0.835

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000011710	ENSPFOP00000016489	ENSPFOP00000011710	ENSPFOP00000016489	Mitochondrial ribosomal protein S25.	Mitochondrial ribosomal protein S18B.	0.996
ENSPFOP00000011710	ENSPFOP00000030063	ENSPFOP00000011710	ENSPFOP00000030063	Mitochondrial ribosomal protein S25.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.999
ENSPFOP00000011710	LOC103141776	ENSPFOP00000011710	ENSPFOP00000007300	Mitochondrial ribosomal protein S25.	Mitochondrial ribosomal protein S27.	0.999
ENSPFOP00000011710	mrps11	ENSPFOP00000011710	ENSPFOP00000017660	Mitochondrial ribosomal protein S25.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.999
ENSPFOP00000011710	mrps28	ENSPFOP00000011710	ENSPFOP00000020951	Mitochondrial ribosomal protein S25.	Mitochondrial ribosomal protein S28.	0.992
ENSPFOP00000011710	mrps31	ENSPFOP00000011710	ENSPFOP00000008698	Mitochondrial ribosomal protein S25.	Mitochondrial ribosomal protein S31.	0.999
ENSPFOP00000011710	mrps5	ENSPFOP00000011710	ENSPFOP00000006790	Mitochondrial ribosomal protein S25.	Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
ENSPFOP00000011710	trmt10b	ENSPFOP00000011710	ENSPFOP00000005322	Mitochondrial ribosomal protein S25.	tRNA methyltransferase 10B.	0.858
ENSPFOP00000016489	ENSPFOP00000011710	ENSPFOP00000016489	ENSPFOP00000011710	Mitochondrial ribosomal protein S18B.	Mitochondrial ribosomal protein S25.	0.996
ENSPFOP00000016489	ENSPFOP00000030063	ENSPFOP00000016489	ENSPFOP00000030063	Mitochondrial ribosomal protein S18B.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.978
ENSPFOP00000016489	LOC103141776	ENSPFOP00000016489	ENSPFOP00000007300	Mitochondrial ribosomal protein S18B.	Mitochondrial ribosomal protein S27.	0.996
ENSPFOP00000016489	mrps11	ENSPFOP00000016489	ENSPFOP00000017660	Mitochondrial ribosomal protein S18B.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.997
ENSPFOP00000016489	mrps28	ENSPFOP00000016489	ENSPFOP00000020951	Mitochondrial ribosomal protein S18B.	Mitochondrial ribosomal protein S28.	0.991
ENSPFOP00000016489	mrps31	ENSPFOP00000016489	ENSPFOP00000008698	Mitochondrial ribosomal protein S18B.	Mitochondrial ribosomal protein S31.	0.998
ENSPFOP00000016489	mrps5	ENSPFOP00000016489	ENSPFOP00000006790	Mitochondrial ribosomal protein S18B.	Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.994
ENSPFOP00000016489	trmt10b	ENSPFOP00000016489	ENSPFOP00000005322	Mitochondrial ribosomal protein S18B.	tRNA methyltransferase 10B.	0.850
ENSPFOP00000030063	ENSPFOP00000011710	ENSPFOP00000030063	ENSPFOP00000011710	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	Mitochondrial ribosomal protein S25.	0.999
ENSPFOP00000030063	ENSPFOP00000016489	ENSPFOP00000030063	ENSPFOP00000016489	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	Mitochondrial ribosomal protein S18B.	0.978
ENSPFOP00000030063	LOC103141776	ENSPFOP00000030063	ENSPFOP00000007300	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	Mitochondrial ribosomal protein S27.	0.999
ENSPFOP00000030063	mrps11	ENSPFOP00000030063	ENSPFOP00000017660	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.999