Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000005340Transmembrane protein 170B. (130 aa)    
Predicted Functional Partners:
ndc1
NDC1 transmembrane nucleoporin.
      
 0.656
TMEM158
Transmembrane protein 158 (gene/pseudogene).
      
 0.582
ENSPFOP00000000634
Transmembrane protein 98.
      
 0.534
tmem98
Transmembrane protein 98.
      
 0.534
LOC103134021
V-set and transmembrane domain containing 4a.
      
 0.514
vstm4
V-set and transmembrane domain containing 4b.
      
 0.514
ENSPFOP00000008380
Si:ch211-233a24.2.
    
   0.505
C1orf43
Chromosome 1 open reading frame 43.
    
   0.505
LOC103140814
Zgc:123238.
    
   0.505
ENSPFOP00000030689
Uncharacterized protein.
    
   0.505
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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