ENSPFOP00000005367 protein (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPFOP00000005367

Poly [ADP-ribose] polymerase. (1397 aa)

Predicted Functional Partners:

pes1

0.530

ENSPFOP00000009526

0.506

ENSPFOP00000017575

0.494

mycbp2

0.468

gnl3l

0.427

ENSPFOP00000017714

0.427

mycbp

0.422

LOC103143464

0.422

gnl2

0.413

rpl8

0.404

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000005367	ENSPFOP00000009526	ENSPFOP00000005367	ENSPFOP00000009526	Poly [ADP-ribose] polymerase.	WD repeat domain 18.	0.506
ENSPFOP00000005367	ENSPFOP00000017575	ENSPFOP00000005367	ENSPFOP00000017575	Poly [ADP-ribose] polymerase.	Testis expressed 10.	0.494
ENSPFOP00000005367	ENSPFOP00000017714	ENSPFOP00000005367	ENSPFOP00000017714	Poly [ADP-ribose] polymerase.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.427
ENSPFOP00000005367	LOC103143464	ENSPFOP00000005367	ENSPFOP00000004153	Poly [ADP-ribose] polymerase.	MYC binding protein.	0.422
ENSPFOP00000005367	gnl2	ENSPFOP00000005367	ENSPFOP00000012971	Poly [ADP-ribose] polymerase.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.413
ENSPFOP00000005367	gnl3l	ENSPFOP00000005367	ENSPFOP00000008062	Poly [ADP-ribose] polymerase.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.427
ENSPFOP00000005367	mycbp	ENSPFOP00000005367	ENSPFOP00000001972	Poly [ADP-ribose] polymerase.	Uncharacterized protein.	0.422
ENSPFOP00000005367	mycbp2	ENSPFOP00000005367	ENSPFOP00000010666	Poly [ADP-ribose] polymerase.	MYC binding protein 2.	0.468
ENSPFOP00000005367	pes1	ENSPFOP00000005367	ENSPFOP00000014914	Poly [ADP-ribose] polymerase.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.530
ENSPFOP00000005367	rpl8	ENSPFOP00000005367	ENSPFOP00000014587	Poly [ADP-ribose] polymerase.	Ribosomal protein L8.	0.404
ENSPFOP00000009526	ENSPFOP00000005367	ENSPFOP00000009526	ENSPFOP00000005367	WD repeat domain 18.	Poly [ADP-ribose] polymerase.	0.506
ENSPFOP00000009526	ENSPFOP00000017575	ENSPFOP00000009526	ENSPFOP00000017575	WD repeat domain 18.	Testis expressed 10.	0.999
ENSPFOP00000009526	ENSPFOP00000017714	ENSPFOP00000009526	ENSPFOP00000017714	WD repeat domain 18.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.982
ENSPFOP00000009526	gnl2	ENSPFOP00000009526	ENSPFOP00000012971	WD repeat domain 18.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.993
ENSPFOP00000009526	gnl3l	ENSPFOP00000009526	ENSPFOP00000008062	WD repeat domain 18.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.982
ENSPFOP00000009526	pes1	ENSPFOP00000009526	ENSPFOP00000014914	WD repeat domain 18.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.997
ENSPFOP00000009526	rpl8	ENSPFOP00000009526	ENSPFOP00000014587	WD repeat domain 18.	Ribosomal protein L8.	0.964
ENSPFOP00000017575	ENSPFOP00000005367	ENSPFOP00000017575	ENSPFOP00000005367	Testis expressed 10.	Poly [ADP-ribose] polymerase.	0.494
ENSPFOP00000017575	ENSPFOP00000009526	ENSPFOP00000017575	ENSPFOP00000009526	Testis expressed 10.	WD repeat domain 18.	0.999
ENSPFOP00000017575	ENSPFOP00000017714	ENSPFOP00000017575	ENSPFOP00000017714	Testis expressed 10.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.956