Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103141472Si:ch211-261p9.4. (291 aa)    
Predicted Functional Partners:
ZNF654
Zinc finger protein 654.
      
 0.709
LOC103147201
Uncharacterized protein.
      
 0.709
thoc3
THO complex 3.
      
 0.633
dnajb4
DnaJ heat shock protein family (Hsp40) member B4.
    
   0.600
LOC103151990
DnaJ heat shock protein family (Hsp40) member B1a.
    
   0.600
dnajb1
DnaJ heat shock protein family (Hsp40) member B1b.
    
   0.600
dnajb13
DnaJ heat shock protein family (Hsp40) member B13.
    
   0.600
npm3
Nucleophosmin/nucleoplasmin, 3.
      
 0.548
nit1
Nitrilase 1.
      
 0.547
LOC103155150
Zgc:122979.
    
   0.528
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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