Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hars1Histidyl-tRNA synthetase. (524 aa)    
Predicted Functional Partners:
yars1
Tyrosine--tRNA ligase.
  
 
 0.981
ENSPFOP00000018153
Glutamyl-prolyl-tRNA synthetase.
  
 
 0.977
mars1
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.953
eif2s1
Eukaryotic translation initiation factor 2, subunit 1 alpha b.
   
 0.952
vars2
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.924
psmd14
Proteasome 26S subunit, non-ATPase 14.
  
 
 0.924
lars1
Leucyl-tRNA synthetase b; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.914
kars1
Lysine--tRNA ligase.
  
 
 0.914
dars2
Aspartyl-tRNA synthetase 2, mitochondrial.
  
  
 0.893
LOC103132552
Glycyl-tRNA synthetase.
  
 
 0.870
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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