STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp12Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family. (372 aa)    
Predicted Functional Partners:
ENSPFOP00000015650
WD repeat domain 48b.
   
 0.956
wdr20
WD repeat domain 20a.
   
 0.885
LOC103138323
DM1 locus, WD repeat containing.
   
 0.885
ENSPFOP00000015367
WD repeat domain 20b.
   
 0.865
rps27a
Ribosomal protein S27a.
    
  0.802
LOC103132215
Ubiquitin-like domain-containing protein.
    
  0.795
fancd2
FA complementation group D2.
    
 0.795
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.781
ENSPFOP00000015303
FA complementation group I.
   
 0.771
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.743
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.