STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000008025V-SNARE coiled-coil homology domain-containing protein. (96 aa)    
Predicted Functional Partners:
ENSPFOP00000007356
Intersectin 2a.
     
 0.993
ENSPFOP00000011660
Intersectin 2b.
     
 0.993
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.837
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.837
LOC103144292
Syntaxin 16.
    
 0.832
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.826
STX19
Syntaxin 19.
    
 0.818
nsf
N-ethylmaleimide-sensitive factor a.
   
 0.807
ENSPFOP00000025710
N-ethylmaleimide-sensitive factor b; Belongs to the AAA ATPase family.
   
 0.807
stx8
Syntaxin 8.
    
 0.804
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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