STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103156669Plac8 onzin related protein 3. (126 aa)    
Predicted Functional Partners:
LOC103139106
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.994
trip12
Thyroid hormone receptor interactor 12.
   
 0.951
ENSPFOP00000002114
Helicase C-terminal domain-containing protein.
    
 0.840
zfand4
Zinc finger, AN1-type domain 4.
   
 0.831
ENSPFOP00000005078
BRCA1 associated RING domain 1.
    
 0.795
ENSPFOP00000004198
Baculoviral IAP repeat containing 6.
   
 0.794
ENSPFOP00000005486
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 0.792
LOC103137132
Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.
    
 0.791
ranbp2
RAN binding protein 2.
   
 0.780
LOC103132215
Ubiquitin-like domain-containing protein.
   
 0.779
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.