STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC25A28Solute carrier family 25 member 28; Belongs to the mitochondrial carrier (TC 2.A.29) family. (399 aa)    
Predicted Functional Partners:
nars2
Asparaginyl-tRNA synthetase 2, mitochondrial.
 
   
  0.590
fxn
Frataxin.
    
 
 0.590
nars1
Asparaginyl-tRNA synthetase.
 
   
  0.533
mrpl4
Mitochondrial ribosomal protein L4.
    
 
 0.510
mrs2
Magnesium transporter.
    
 
 0.508
eif2b3
Eukaryotic translation initiation factor 2B, subunit 3 gamma.
    
 
 0.495
iscu
Iron-sulfur cluster assembly enzyme; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.
   
  
 0.486
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
      
 0.480
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
 
 0.426
slc31a1
Solute carrier family 31 member 1.
      
 0.400
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
Server load: low (20%) [HD]