STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf141Ring finger protein 141. (226 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
     
 0.767
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 
  0.614
LOC103132215
Ubiquitin-like domain-containing protein.
    
  0.596
rps27a
Ribosomal protein S27a.
    
  0.596
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
    
  0.574
ENSPFOP00000015014
Ubiquitin-like modifier activating enzyme 5.
    
  0.574
LOC103142460
Choline kinase alpha.
      
 0.510
rbp4
Retinol binding protein 4, plasma; Belongs to the calycin superfamily. Lipocalin family.
      
 0.510
LOC103154398
Stomatin.
      
 0.509
LOC103154397
Stomatin.
      
 0.509
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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