STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdx4Caudal type homeobox 4. (271 aa)    
Predicted Functional Partners:
ogg1
8-oxoguanine DNA glycosylase.
      
 0.565
pde6c
Phosphodiesterase.
      
 0.563
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
      
 0.497
medag
Uncharacterized protein.
      
 0.491
ENSPFOP00000028892
Spermatogenesis associated 22.
      
 0.483
LOC103147705
POU domain protein.
    
 
 0.469
ENSPFOP00000008341
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.464
ENSPFOP00000016611
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.464
ENSPFOP00000017469
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.464
ENSPFOP00000012340
TIMP metallopeptidase inhibitor 2a.
      
 0.451
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.