STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000010092Uncharacterized protein. (396 aa)    
Predicted Functional Partners:
ENSPFOP00000001871
Homeobox C5a.
   
 
0.869
hoxc6
Homeobox C6a.
   
 
0.856
LOC103155863
Homeobox domain-containing protein.
   
 
0.743
HOXB6
Homeobox B6.
   
 
0.743
ENSPFOP00000014027
Homeobox D4a.
   
 
0.701
ENSPFOP00000018267
Homeobox B5b.
   
 
0.696
LOC103155864
Homeobox domain-containing protein.
   
 
0.696
LOC103152427
Pre-B-cell leukemia homeobox 2.
    
 0.668
pbx1
Homeobox domain-containing protein.
    
 0.668
pbx3
Homeobox domain-containing protein.
    
 0.668
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.