STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000010740WD repeat and FYVE domain containing 3. (1901 aa)    
Predicted Functional Partners:
sqstm1
Sequestosome 1.
   
 
 0.828
gabarapl2
GABA(A) receptor-associated protein like 2.
   
 
 0.757
GABARAPL2
GABA type A receptor associated protein like 2.
   
 
 0.757
ENSPFOP00000016083
Pleckstrin homology domain containing, family G (with RhoGef domain) member 7.
    
 0.717
ENSPFOP00000027647
Uncharacterized protein.
    
 0.717
ENSPFOP00000008191
Receptor for activated C kinase 1.
    
 0.685
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.684
smpd2
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
     
 0.680
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
    
 
 0.679
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 
 0.642
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.