STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000011051Histone deacetylase 10. (672 aa)    
Predicted Functional Partners:
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.910
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.910
LOC103129818
H2A histone family, member Y; Belongs to the histone H2A family.
   
 0.786
LOC103149692
SIN3 transcription regulator family member Ab.
   
 0.779
sin3b
SIN3 transcription regulator family member B.
   
 0.779
sin3a
SIN3 transcription regulator family member Aa.
   
 0.779
ubb
Ubiquitin B.
   
 0.769
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.768
wdr73
WD repeat domain 73.
   
 0.761
LOC103129685
WD_REPEATS_REGION domain-containing protein.
   
 0.761
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.