STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103135118RNA binding motif protein 24a. (233 aa)    
Predicted Functional Partners:
LOC103136652
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
 
 0.764
ENSPFOP00000001887
RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.
  
 
 0.747
LOC103137756
RNA binding fox-1 homolog 2.
  
 
0.640
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
     
 0.529
sf3b1
Splicing factor 3b, subunit 1.
     
 0.517
sf3b3
Splicing factor 3b, subunit 3.
     
 0.514
sf3b4
Splicing factor 3b, subunit 4.
     
 0.494
ddx42
DEAD (Asp-Glu-Ala-Asp) box helicase 42.
    
  0.493
LOC103150602
Transformer 2 beta homolog.
  
   
 0.423
ENSPFOP00000016260
RRM domain-containing protein.
  
   
 0.416
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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