STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103142816Uncharacterized protein. (246 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.832
ENSPFOP00000007885
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.832
LOC103132215
Ubiquitin-like domain-containing protein.
    
  0.673
rps27a
Ribosomal protein S27a.
    
  0.673
rab21
RAB21, member RAS oncogene family.
   
 
 0.613
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.594
ENSPFOP00000004894
Uncharacterized protein.
    
 0.594
ENSPFOP00000029094
Uncharacterized protein.
    
 0.594
LOC103141501
Uncharacterized protein.
    
 0.583
ENSPFOP00000024590
Alsin Rho guanine nucleotide exchange factor ALS2 b.
    
 0.583
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.