STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103153874Dynein light chain roadblock. (96 aa)    
Predicted Functional Partners:
ENSPFOP00000023234
Dynein, cytoplasmic 2, light intermediate chain 1.
    
 0.957
wdr60
WD repeat domain 60.
    
 0.954
dynlt1
Dynein, light chain, Tctex-type 1.
  
 0.954
LOC103134289
Dynein, cytoplasmic 1, intermediate chain 2a.
   
 0.944
ENSPFOP00000011829
Uncharacterized protein.
   
 0.944
LOC103154118
Uncharacterized protein.
  
 0.940
LOC103147013
Dynein, cytoplasmic 1, intermediate chain 2b.
   
 0.937
dync1li2
Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.
    
 0.933
wdr34
WD repeat domain 34.
    
 0.932
tctex1d2
Tctex1 domain containing 2.
  
 0.930
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.