STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103149894Mesoderm posterior aa. (244 aa)    
Predicted Functional Partners:
ENSPFOP00000004648
T-box transcription factor 6.
    
 0.756
ENSPFOP00000017971
T-box transcription factor 16.
    
 0.735
LOC103149824
Transcription factor 3b.
    
 0.678
TCF3
Transcription factor 3a.
    
 0.678
LOC103151249
Transcription factor 3a.
    
 0.678
tcf12
Transcription factor 12.
    
 0.678
TCF4
Transcription factor 4.
    
 0.678
LOC103155692
BHLH domain-containing protein.
    
 0.660
LOC103150493
LIM-domain binding 1b.
    
 0.589
LOC103152234
LIM domain binding 1a.
    
 0.589
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.